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Contents
From the Co-Director
Announcements
Achievements
Where Have We Been?
Where Are We Going?
People
New Students
Publications
Last Thought
Archives
December, 2004
October, 2004
Original News Page
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Volume 1, Number 1 | October, 2004

An Illustration from the paper “Defining point-set surfaces”, by Nina Amenta and Yong Kil, published at SIGGRAPH 2004.
The Newsletter is here!
Welcome to the
first issue of the newsletter for the Visualization and Graphics
Research Group of the Institute for Data Analysis and
Visualization at UC Davis.
We currently have seven faculty, 5 post-doctoral
researchers, 45+ graduate students, 10+ undergraduate
researchers and several international visitors performing
research in this group, and it is very difficult to get an overview of the activities of
this group. A newsletter is
a great way to provide interesting, useful information to
targeted audiences, and we have plans to produce this regular
newsletter to highlight the activities of our group.
Initially, the newsletter will be published monthly, although
deadlines, intercessions and summers may cause us to miss an
issue.
To make this
newsletter successful, we need information from the faculty and
students of IDAV.
We need to know the titles of published papers and who presents
them, we need to know the scheduled speakers in our seminar
series, and we need general information about the faculty,
staff, students, and alumni of our institute. We also need
pictures, as we are a "visual" group.
If you have
information you would like to include, or any comments, please
email it to
newsletter@idav.ucdavis.edu.
Enjoy!
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The newsletter of the Visualization and Graphics Group of IDAV is published bi-monthly. If you have information you would like to include, or any comments, please email it to newsletter@idav.ucdavis.edu.

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A lot has happened over the past
few months. Most of you have noticed, but I'll review it for
you! First, Bernd Hamann has been appointed to the position of
Associate Vice Chancellor for Research at UC Davis. In this
capacity, he has responsibility for oversight of the various
Organized Research Units at UC Davis, of which IDAV is one.
This meant that he could not continue in his position as co-director
of IDAV and the campus initiated a "search" to find his replacement. In September,
Ken Joy was asked to
serve as the new co-director of the Institute for Data Analysis and
Visualization, and the activities of this "interesting" year were
finally complete.
You may also have
noticed that our name has changed. We applied for this change
in 1998, and our patience finally paid off when it was
approved in May of 2004.
So, we have a new
co-director, and a new name!
I have always thought
that the success formula at the University of California was very
simple: You recruit the best faculty, the best postdocs, and
the best graduate students to UC Davis, and then set up an
infrastructure that enables them to be successful. In the past
few years, we have been very fortunate to attract some of the
world's truly outstanding faculty to our research group, and many
professional colleagues have told me that our graduate students are
the "envy" of most universities. But, in order to help these
great people become successful, we must create a productive
infrastructure, and for us that is IDAV.
IDAV is an Organized Research
Unit at UC Davis that is directly placed under the Vice Chancellor
for Research. It is affiliated with a number of departments --
Computer Science, Applied Science, Electrical and Computer
Engineering, Epidemiology, the Graduate School of Management, and
the School of Medicine -- but is placed outside the "academic
bureaucracy." This enables us to move quickly in new
situations without the bureaucratic overhead. As an organized
research unit, we get support from the University in the form of
space (which is the most valuable commodity on campus) and support
for our staff.
I now have
responsibility for this research infrastructure. To improve
this infrastructure, I need input from you. I need to know the
resources that you need to be successful, and I need feedback to see
if our actions have a positive effect. I want to do everything
I can to increase the productivity of everyone affiliated with IDAV.
That is my single goal in taking this job.
My office will be in
2142 Academic
Surge, and I will be wandering through the lab frequently. Feel
free to talk with me about your work, because the more I know, the
better I can represent your needs in my discussions with the campus.
When you bring in the best people,
and provide a great infrastructure, then everything works well, everyone
becomes successful, and everyone has fun! I
will work very hard to make your
work at IDAV fun!
Ken
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Installation of a 18'x9' tiled
display wall will begin in October. The display wall will be located
in the Virtual Reality Laboratory and will comprise six tiles with 12 projectors.
It will support active stereo, and an Intersense
ultrasound/inertial tracking system. A picture of the basic
configuration is shown below.

This will be a wonderful addition to our lab.
The projects utilizing this system will be headed by Professor Oliver
Staadt.
Graduate Program Announcements
The "all-hands"
meeting of the IDAV Visualization and Graphics Group will be held
from 7:00-8:30PM on Thursday, September 30, 2004 in Kemper Hall Room
1065. This is a required meeting for all students who work in
IDAV, or who aspire to work in IDAV. Be There!
Don't forget the weekly seminar of the
Visualization and Graphics Group. It will be held Wednesday's
from 5:30-6:30PM. The room will be announced at a later date.
Put it on your calendars!
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Awards
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John Owens has been awarded the Department of Energy Early Career Principal Investigator Award.
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Janine
Bennett
has received a Student Employee Graduate Research Fellowship (SEGRF) from Lawrence Livermore National Laboratory. She will be working with
Valerio Pascucci
and Ken Joy on her research.
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Dan Coming has been awarded a
HP-CITRIS Fellowship.
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Eric Klein received an
Honorable Mention in the National Science Foundation Graduate
Research Fellowship Program.
Invited Talks
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Nina Amenta
gave an invited talk at the conference on Mathematical Methods for
Curves and Surfaces, held in Tromso, Norway from July 1-6, 2004.
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Oliver Staadt gave an invited
talk at the High-Performance Computing Symposium, held in
Arlington, VA, from April 18-22, 2004.
Best Paper Awards
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Oliver Staadt
was co-author of blue-c API: A Multimedia and 3D Video Enhanced
Toolkit for Collaborative VR and Telepresence, which received the
best paper award at the International Conference on Virtual
Reality Continuum and its Applications in Industry (VRCAI) 2004,
held in Singapore.
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Lok Hwa,
Mark Duchaineau,
and
Ken Joy
were co-authors of 4-8 Texture Hierarchies, which was chosen as
one of the top eight papers at IEEE Visualization 2004, to be held
in Austin TX on October 10-15, 2004. This paper has been invited
to be expanded and submitted to the IEEE Transactions on
Visualization and Computer Graphics, and will compete for the
best paper award in the conference.
Professional Activities
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Bernd
Hamann
was co-organizer of the Conference on Mathematical Foundations of
Scientific Visualization, Computer Graphics, and Massive Data
Exploration, held May 22-27, 2004 at Pacific Institute for the
Mathematical Sciences at the Banff International Research Station,
in Banff, Alberta, Canada. One of the goals of this project was
to establish a Dagstuhl-like meeting of visualization
researchers in North America. The conference included
presentations and brain-storming sessions to attempt to discover
new research avenues in visualization and data exploration. Bernd
collaborated with Torsten Moeller and Robert Russell of Simon
Fraser University on this effort.
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Ken Joy
has been selected to be on the organizing panel for the National
Visual Analytics Center. This panel will develop the R&D agenda
that will guide future research and development of visual
analytics tools and technologies targeted toward Homeland Security
issues. The group met in Richland, Washington from August 3-5,
2004 and will have a second meeting in Austin, Texas from October
7-9, 2004. The results of the two workshops will be a book
describing the research agenda in visual analytics. Look for this
book to be published in January 2005.
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Ken Joy
has been selected conference co-chair for the 2005 and 2006
EuroVis conference. (EuroVis is the now the name for the former
VisSym conference). The 2005 conference will be held in Leeds,
England, June 1-3, 2005, and the 2006 conference will be held in
Pisa, Italy.
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Oliver Staadt has been selected
to serve on the program committee of IEEE Virtual Reality 2005.
The conference will be held in Bonn, Germany, March 12-16, 2004.
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Ken Joy
has been selected as co-chair of the 2005 and 2007 Dagstuhl
Visualization seminars. The 2005 seminar will be held the second
week of June in 2005.
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Ken Joy has been selected as a member of an NSF/NIH panel
to develop the future research agenda for Visualization.
This effort seeks to update the 1986 NSF report on Visualization.
The panel meets September 22-23, 2004
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Aaron Lefohn was co-organizer and speaker in the ACM/SIGGRAPH
short course GPGPU: General-Purpose Computation on Graphics
Hardware, held August 11, 2004 at SIGGRAPH 2004 in Los
Angeles. He was also a speaker in the short course
"Real-time Volume Graphics."
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John Owens
was on the program committee for the Graphics Hardware Conference.
This conference was held from August 29-30 in Grenoble, France.
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Oliver Staadt served as program
co-chair of the High Performance Computing Symposium, held in Arlington, VA, from April
18-22, 2004.
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Illustration from Wiley, et al.,
Ray Casting Curved-Quadratic Elements, VisSym
2004
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Conferences and Workshops
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Ingrid Hotz
and
Ken Joy
attended the Dagstuhl Seminar Perspectives Workshop:
Visualization and Image Processing of Tensor Fields, organized by
Joacim Weickert of the University of Saarlands and Hans Hagen from
the University of Kaiserslautern. This seminar brought together
researchers from mathematical sciences, image processing, medical
sciences and visualization to discuss the difficulties in
visualizing tensor field data. The seminar was held from April
18-23, 2004
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Kwan-Liu Ma
and Ken Joy attended the DoE VIEWS workshop at Salt Lake
City, Utah, July 20-21, 2004.
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Kwan-Liu Ma
gave several invited talks on his recent trip to Taiwan. He
gave talks at the National Cheng Kung University on July 6, 2004,
at the National Chao Tung University on July 7, 2004, and at the
National Taiwan University on July 9, 2004.
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Chris Co, Brett Wilson
and
David Wiley
attended the Joint Eurographics/IEEE TCVG Symposium on
Visualization, held in Konstanz, Germany, May 19-21, 2004. Chris
presented the paper Meshless Isosurface Generation from
Multiblock Data with authors Chris Co, Serban Porumbescu and
Ken
Joy. David presented the paper Ray Casting Curved-Quadratic
Elements, with authors David Wiley, Hank Childs, Bernd Hamann,
and Ken Joy. Brett presented two papers: "A
Cluster-Space Visual Interface for Arbitrary Dimensional
Classification of Volume Data," with co-authors Francis Tzeng
and Kwan-Liu Ma, and "High-Quality Lighting for
Pre-Integrated Volume Rendering," with co-authors Eric Lum,
Brett Wilson and Kwan-Liu Ma.
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Ben Gregorski
and
Josh Senecal
attended the Computer Graphics and Imaging Conference (CGIM) 2004,
held in Honolulu, Hawaii, August 17-19, 2004. Ben presented the
paper Out-of-core Interactive Display of Large Meshes using an
Oriented Bounding Box-based Hardware Depth Query, with authors
Haeyoung Ha, Ben Gregorski and Ken Joy. Josh presented the paper
Reversible N-Bit to N-Bit Integer Haar-like Transforms, with
authors Josh Senecal, Mark Duchaineau and Ken Joy
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Yong Kil
and
Nina Amenta
presented the paper Defining Point-set Surfaces, at SIGGRAPH
2004. Yong had the extra pressure of presenting the first paper
of the conference, and he did great!
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Aaron Lefohn
and John Owens co-authored the paper "Mio: Fast
Multipass Partitioning via Priority-Based Instruction Scheduling" at Graphics
Hardware in August. They co-authored the paper with Andy Riffel,
Kiril Vidimce, and Mark Leone..
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Many IDAV students and faculty attended the ACM/SIGGRAPH
conference in Los Angeles, which was held August 8-12, 2004. They
included Nina Amenta, Oliver Staadt, John Owens,
Nelson Max,
Kwan-Liu Ma, Ken Joy, Chris Co, Aaron Lefohn,
Brian Budge, Eric
Lum, Serban Porumbescu, Ben Gregorski, Louis Feng,
Francis Tzeng,
Attila Gyulassy, Taylor Holliday, Lok Hwa, Yong Kil,
Sung Park,
Valerie Szudziejka,
Hiroshi Akiba,
Runzhen Huang, Hongfeng Yu, Minya Dai
and Justin Walker.
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Eric Klein and Oliver Staadt
attended the High-Performance Computing Symposium in Arlington,
VA, April 18-22, 2004. Eric presented the paper "Sonification of
Three-dimensional Vector Fields" with authors Eric Klein and
Oliver Staadt.
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Kwan-Liu Ma gave an invited
talk at Nissan Motor Company in Japan on June 24, 2004.
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Yong Kil presented the paper
"The Domain of a Point Set Surface" at the Eurographics Symposium
on Point-based Graphics, held in Zurich Switzerland, June 2-4,
2004. He co-authored this paper with Nina Amenta.
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Brett Wilson presented the
paper "I/O Strategies for Parallel rendering of Large Time-Varying
Volume Data," at the Eurographics Symposium on parallel Graphics
and Visualization (EGPGV04) at Grenoble, France, June 10-11, 2004.
The paper was co-authored by Hongfeng Yu, Kwan-Liu Ma
and Joel Welling.
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Bernd Hamann,
Ingrid Hotz, Peer-Timo Bremer, Kwan-Liu Ma
and
Ken Joy
attended the Conference on Mathematical Foundations of Scientific
Visualization, Computer Graphics, and Massive Data Exploration,
held May 22-27, 2004 at Pacific Institute for the Mathematical
Sciences at the Banff International Research Station, in Banff,
Alberta, Canada.
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Ken Joy
attended the workshop to set the R&D agenda for the National
Visual Analytics Center in Richland Washington, held August 3-5,
2004.
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Brett Wilson
presented the paper "Rendering Complexity in Computer-Generated
Pen-and-Ink Illustrations," at the 3rd International Symposium on
non-Photorealistic Animation and Rendering, held in Annecy,
France, June 7-9, 2004. He co-authored the paper with
Kwan-Liu Ma.
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Kwan-Liu Ma
participated in the National Science Foundations ITR Principal
Investigator meeting in Washington DC on May 23-27, 2004.
Internships
The Institute seems empty this summer, as many of our students have internships where they work jointly
on problems with our industrial and national laboratory partners.
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Aaron Lefohn worked
at Pixar this summer. He normally works one day per week at Pixar
during the academic year.
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Hiroshi
Akiba
worked at the National Center for Atmospheric Research in Boulder
Colorado.
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Karim
Mahrous
is working at Electronic Arts for the summer.
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Janine
Bennett
is working with Valerio Pascucci at Lawrence Livermore National
Laboratory.
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Sung
Park
is working with Peter Lindstrom at Lawrence Livermore National
Laboratory for the summer.
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Valerie
Szudziejka
is working at Lawrence Livermore National Laboratory.
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Taylor
Holliday
is working with Valerio Pascucci at Lawrence Livermore National
Laboratory this summer.
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Serban
Porumbescu
is working with Mark Duchaineau at Lawrence Livermore National
Laboratory.
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Robert
Lin is working at Electronic Arts.
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Brian
Budge has an internship at NVIDIA.
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Eric Klein has an
internship at the Naval Research Lab in Washington, D.C.
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Brett Wilson spent the
summer at Google.
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IEEE Visualization 2004
Lok Hwa,
Ingrid Hotz,
Eric Lum,
Greg Schussman
(alumni), and
Min-Yu Wang
will all present papers at the IEEE Visualization Conference, to be
held in Austin, Texas, on October 10-15, 2004.
Lok
will present the paper Adaptive 4-8 Texture Hierarchies, that he
co-authored with
Mark Duchaineau
and
Ken Joy
Ingrid
will present the paper Physically Based Methods for Tensor Field
Visualization, that she co-authored with
Louis Feng,
Hans Hagen,
Bernd Hamann,
Boris Jeremic
and
Ken Joy
Eric
will present the paper Lighting Transfer Functions Using Gradient
Aligned Sampling, that he co-authored with
Kwan-Liu Ma.
Greg,
who received his Ph.D. this year, will be presenting the paper
Anisotropic Volume Rendering for Extremely Dense, Thin Line Data,
that he co-authored with
Kwan-Liu Ma.
Min-Yu
will present the paper Visualizing Gyrokinetic Simulations, that
he co-authored with
Kwan-Liu Ma,
Min-Yu Huang,
Scott Klasky
and
Stephane Ethier.
Aaron Lefohn,
Ian Buck, Robert Strzodka, and John Owens will be giving a
tutorial at the conference entitled "GPGPU: General Purpose
Computation on Graphics Processors". Aaron is
the organizer of this tutorial.
Pacific Graphics 2004
Josh Senecal and Brian Budge will attend Pacific Graphics 2004, held
in Seoul, Korea on October 6-8, 2004.
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Josh
will present the paper An improved N-bit to N-bit reversible Haar-like
Transform, that he co-authored with
Peter Lindstrom,
Mark Duchaineau
and
Ken Joy
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Brian
will present the paper Multi-dimensional transfer functions for
interactive 3D flow visualization, that he co-authored with
Sung Park,
Lars Linsen,
Bernd Hamann,
and
Ken Joy.
Supercomputing
2004
Hongfeng Yu and Kwan-Liu Ma will
attend Supercomputing 2004, held in Pittsburg on November 6-12,
2004.
Workshop on
Visualization and Data Mining for Computer Security
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Soon Tee Teoh will present the paper
"Combining Visual and Automated Data Mining for Near Real Time
Anomaly Detection and Analysis in BGP" at the CCS Workshop on
Visualization and Data Mining for Computer Security, to be held in
Washington DC, October 29, 2004. He co-authored this paper
with Ke Zhang, Shih-Ming Tseng, Kwan-Liu Ma and S. Felix
Wu.
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Chris Muelder will present the paper (PortVis: A Tool for
Port-Based Detection of Security Events) at the CCS Workshop on
Visualization and Data Mining for Computer Security, October 29,
2004. The paper has co-authors Jonathan McPerson,
Kwan-Liu Ma, Paul Krystosk, Tony Bartoletti, and Marvin
Chrisstensen.
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Degrees Awarded
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Justin
Walker
received his Masters Degree in Computer Science and has started
work at Rhythm and Hues in July.
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Peer-Timo
Bremer
has taken a Postdoc position with John Hart at the University of
Illinois, Urbana-Champaign. His Ph.D. will be signed off in
December.
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Lars
Linsen,
who has been a Postdoc in IDAV for nearly two years, has taken a
professorial position at Universität Greifswald in Germany.
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Ben
Gregorski
received his Ph.D. in Computer Science and has started work at
Electronic Arts in Redwood City.
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Eric Lum has received his Ph.D. in Computer Science. He
will stay at IDAV as a postdoc.
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Soon Tee Teoh has received his Ph.D. in Computer Science.
He will stay at IDAV as a postdoc.
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Yang
Liu
received his Ph.D. in Computer Science. He has plans for attending
Law School.
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Greg Schussman
received his Ph.D. in Computer Science, and is working at SLAC.
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Christian
Hofsetz
received his Ph.D. in Computer Science and now is a professor at
Universidade do Vale do Rio dos Sinos in
Brazil.
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Jonathan
McPherson
received his Masters Degree in Computer Science and has started
work at Microsoft in Redmond Washington.
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Alden
Chew
received his Masters degree in Computer Science and has started
work for Bioware in Alberta Canada.
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Abel
Gezahegne
received his Masters degree in Computer Science and has started
work at Lawrence Livermore National Laboratory.
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Nerissa Oberlander received her
Master's Degree in Computer Science and has started work for
Lockheed Martin.
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Ian Bowman got his Master's Degree in August
2004 and is now with Electronics for Imaging.
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David Crawford, who working in IDAV as an
undergraduate researcher, received his Bachelor's degree in June
2004 and is now with MIT Lincoln Lab
Alumni News
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Liz Jurrus (MS, 1999) has taken a leave of
absence
from Pacific Northwest Laboratory and has entered the computer
science graduate program at the University of Utah to work on her
Ph.D. [SCI got a good one!] Liz will also serve this year as
the secretary of the IEEE Technical Committee on Visualization and
Graphics.
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Gerik Scheuermann (Postdoc,
1999-2001) has accepted a professorial position at the Institut für
Informatik at the Universität Leipzig in Germany. Gerik has
been an Assistant Professor at the Universität Kaiserslautern for
the past few years.
Student News
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A new academic year is starting.
This year we have twelve new students who have expressed interest in
visualization and computer graphics.
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John Anderson comes to us from the
University of Pacific where he received his Bachelors Degree in
June of 2004. John has worked as a summer intern at Lawrence
Livermore National Laboratory for the past two summers, so he
should fit in well.
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Yue Wang graduated from Peking
University (China) with a Master's degree in computer science in
2004.
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Shubhabrata Sengupta comes to us from
the Indian Institute of Technology where he completed a Master's
degree in 1998.
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Deb Ghosh received her Batchelor's
degree from the University of Utah in May. She has been
working in IDAV most of the summer.
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Max Mai is a UC Davis graduate,
receiving his Bachelors Degree from UC Davis in June.
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Tom Slankard is also a UC Davis
graduate, receiving his Bachelor's degree in computer science in
2004. Tom worked in IDAV as an undergraduate.
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Scott Dillard received his Bachelor's
Degree in computer science from UC Davis in June. He also
worked in IDAV as an undergraduate.
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Hari Krishnan received his Batchelor's
from UC Davis in 2002. He worked in private industry for the
past two years.
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Alfred Fuller received his Bachelor's
degree from UC Davis last year. He has a double major in
computer science and computational physics.
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Bojin Li was awarded his Bachelor's
degree from UC Davis in computer science in 2004.
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Chris Muelder graduated with a computer
science Batchelor's Degree from UC Davis last year.
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Luke Gosink comes to us from industry
where he has worked for the past 4 years. He has been an
extension student at UC Davis, taking courses in visualization and
computer graphics for about a year.
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Alex Hartmann is an international
visitor from the Technical University of Vienna. He will be
working with Ken Joy for the next few months, then return
to Vienna to complete his degree.
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Due to the length of this newsletter, and the productivity of our
researchers, we felt that it would be excessive to add a list of the
recent publications with IDAV co-authors to this newsletter.
When the newsletter is published regularly, we will complete this
section.
We invite the reader to browse
through our publication data base at
http://graphics.cs.ucdavis.edu/publications.
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One of the most valuable
books running around the lab is not a visualization or a graphics
text. It is the book "Brag! : The Art of
Tooting Your Own Horn without Blowing It"
by Peggy Klaus. This book (or one
like it) should be an integral part of your library.
"Why?", you ask! Because "self
promotion" is one of the most difficult things for many of us.
We are computer geeks -- quiet people -- who are not well trained at
public speaking or interpersonal communication.
Suppose you meet Pat Hanrahan on an
elevator at the hotel at SIGGRAPH. You have less than 30
seconds to impress him with a description of your work. Could
you do it? I don't believe that many of us could.
So check out this book. I will
be wandering through the lab at times, and will ask this question
when I see you. I have a little more than 30 seconds, but not
much more...
Ken
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If you have
information you would like to include, or any comments, please
email it to
newsletter@idav.ucdavis.edu.
If you would like to be
removed from this mailing list, please send mail to
newsletter@idav.ucdavis.edu and we will remove your name.
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